GgaEX7005080 @ galGal4
Exon Skipping
Gene
ENSGALG00000027392 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:HGNC:8503]
Coordinates
chr5:504925-505444:+
Coord C1 exon
chr5:504925-505045
Coord A exon
chr5:505126-505229
Coord C2 exon
chr5:505349-505444
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATGGCCCTCTCCCTGTTCAGGCA
3' ss Score
9.83
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GTGAGCCACCACCCGCCGGCTGCCGCACACCACGCCGACTCCAAGCATGGCTGGACGCTGCGCCAGGAGATCAAAATCACCAGCAAGTTCCGGGGGAAGTACCTCTCCATCATGCCTCTGG
Seq A exon
GCACCATCCACTGCGTCTTCCATGCGTCCGGCAACCACTACACGTGGAAAAAGGTCACCACCACCGTGCACAACATCATCGTGGGGAAGCTGTGGATCGACCAG
Seq C2 exon
TCGGGTGAGATTGAAATCGTCAACCACAAGACGGGCGATAAGTGCAACCTCAAGTTTGTCCCCTACAGCTACTTCTCCAGGGACGTGGCTAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027392-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(10.6=100)
A:
PF0123713=Oxysterol_BP=FE(9.0=100)
C2:
PF0123713=Oxysterol_BP=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACGCCGACTCCAAG
R:
CTAGCCACGTCCCTGGAGAAG
Band lengths:
186-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]