HsaEX6002099 @ hg19
Exon Skipping
Gene
ENSG00000110048 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:8503]
Coordinates
chr11:59347647-59361197:-
Coord C1 exon
chr11:59361077-59361197
Coord A exon
chr11:59348924-59349027
Coord C2 exon
chr11:59347647-59347742
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATACCTCTTTCTGCTTCCAGGTA
3' ss Score
11.06
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAGTCCAAAAATGGCTGGACATTGCGTCAGGAAATCAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTCG
Seq A exon
GTACCATTCATTGTATTTTCCATGCAACTGGGCACCACTACACTTGGAAGAAAGTTACCACAACTGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG
Seq C2 exon
TCTGGCGAAATTGATATTGTGAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110048-'10-13,'10-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(10.6=100)
A:
PF0123713=Oxysterol_BP=FE(9.0=100)
C2:
PF0123713=Oxysterol_BP=FE(8.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTCATCATCCCCCTGCT
R:
GCTACATCCCGAGAGAAGTAGC
Band lengths:
210-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)