RnoEX0062430 @ rn6
Exon Skipping
Gene
ENSRNOG00000021057 | Osbp
Description
oxysterol binding protein [Source:RGD Symbol;Acc:1308069]
Coordinates
chr1:228413344-228420614:+
Coord C1 exon
chr1:228413344-228413464
Coord A exon
chr1:228419202-228419305
Coord C2 exon
chr1:228420519-228420614
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTATATACTTTTGCTTCCAGGTA
3' ss Score
8.86
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTG
Seq A exon
GTACCATCCACTGCATTTTCCACGCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG
Seq C2 exon
TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021057-'21-14,'21-13,25-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(10.6=100)
A:
PF0123713=Oxysterol_BP=FE(9.0=100)
C2:
PF0123713=Oxysterol_BP=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTCATCATCCCCCTGCT
R:
GCTACATCCCGAGAGAAGTAGC
Band lengths:
210-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]