MmuEX6031701 @ mm10
Exon Skipping
Gene
ENSMUSG00000024687 | Osbp
Description
oxysterol binding protein [Source:MGI Symbol;Acc:MGI:97447]
Coordinates
chr19:11984392-11990782:+
Coord C1 exon
chr19:11984392-11984512
Coord A exon
chr19:11988349-11988452
Coord C2 exon
chr19:11990601-11990782
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTGTATACTTTTGCTTCTAGGTA
3' ss Score
9.5
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTG
Seq A exon
GTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG
Seq C2 exon
GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024687_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.443
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(10.6=100)
A:
PF0123713=Oxysterol_BP=FE(9.0=100)
C2:
PF0123713=Oxysterol_BP=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGGCTGGACATTGCGTC
R:
GGGTTCCTCTTCCACAGCATG
Band lengths:
254-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types