GgaEX7008297 @ galGal4
Exon Skipping
Gene
ENSGALG00000026291 | CDH3
Description
cadherin 3, type 1, P-cadherin (placental) [Source:HGNC Symbol;Acc:HGNC:1762]
Coordinates
chr11:18314725-18315623:+
Coord C1 exon
chr11:18314725-18314969
Coord A exon
chr11:18315046-18315188
Coord C2 exon
chr11:18315399-18315623
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTAACCCGCTGTGCCCGCAGGTA
3' ss Score
10.89
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGTCTGGACTACGAGGCCAAGCGGCAGTTCGTGCTCCACGTGGCCGTGGTCAATGAAGCTCCCTTCGCCATCAAGCTGCCCACAGCCACGGCCACGGTGATGGTCAGTGTGGAGGATGTGAATGAGGCGCCCGTCTTCGACCCGCCGCTGCGGCTGGCCCAGGTGCCGGAGGACGTGCCGCTGGGGCAGCCCCTCGCCTCCTATACAGCACAGGACCCTGACAGGGCCCAGCAGCAGCGCATCAA
Seq A exon
GTACGTGATGGGCAGTGACCCCGCGGGCTGGCTGGCCGTGCACCCCGAGAACGGCCTCATCACAGCACGGGAGCAGCTGGACCGTGAGTCCCCGTTCACCAAGAACAGCACCTACGTGGCCGTGCTGCTGGCTGTGGATGACG
Seq C2 exon
GATTGCCACCCGCCACAGGCACCGGCACGCTGCTCCTCACCCTGCTGGATGTCAATGACCACGGCCCTGAGCCGGAGCCCCGCGACATCGTCATCTGTAACCGCAGCCCTGTGCCTCAGGTGCTGACCATCACCGACCGGGACCTGCCCCCCAACACCGGGCCCTTCCGTGCCGAGCTGAGCCACGGCTCTGGGGACAGCTGGGCGGTGGAGGTTGGCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026291-'17-19,'17-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.204 C2=0.382
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(37.0=45.1),PF0002812=Cadherin=PU(32.6=37.8)
A:
PF0002812=Cadherin=FE(50.5=100)
C2:
PF0002812=Cadherin=PD(15.8=19.7),PF0002812=Cadherin=PU(54.5=63.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGATGTGAATGAGGCG
R:
GCTGCGGTTACAGATGACGAT
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]