RnoEX6060443 @ rn6
Exon Skipping
Gene
ENSRNOG00000020129 | Cdh3
Description
cadherin 3 [Source:RGD Symbol;Acc:621089]
Coordinates
chr19:38705343-38707095:+
Coord C1 exon
chr19:38705343-38705584
Coord A exon
chr19:38705806-38705951
Coord C2 exon
chr19:38706871-38707095
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTTCTCAACCTTCTTTCCAGCTA
3' ss Score
7.56
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGTTTGGATTTTGAGGCTCAGAACCAACACACCCTGTACATAGAAGTGACCAACGAGGCTTCCTTTGCAGTGAAGCTCCCGACTGCCACCGCCACCGTGGTGGTCCATGTGGAAGATGTCAACGAGGCCCCTGTGTTTGTTCCACCTTCCAAGGTCATTGAGGCCCAGGAAGGCATCTCTATTGGGGAACTGGTCTGTGTCTATACTGCACAGGACCCTGACAAGGAGGAACAGAAGATCAG
Seq A exon
CTACAGCATCTTGAGAGACCCAGCCAGCTGGCTTGCTGTGGACCCGGACAGTGGTCAGATAACGGCTGCAGGCATCTTAGATCGTGAGGACGAGCAGTTTGTGAAAAACGACATCTACGAAGTCATGGTGTTGGCCACAGACAATG
Seq C2 exon
GAAACCCTCCCACCACCGGCACTGGGACCCTCCTGCTAACACTTACTGACATCAATGACCATGGCCCAATCCCTGAACCTCGTCAGATCATCATCTGTAACCAAAGCCCCGTGCCTCAAGTGCTGAACATCACAGACAAGGACCTGTCCCCCAACTCCTCCCCTTTCCAGGCCCAGCTCACACATGATTCAGATATCTACTGGATGGCAGAAGTCAGCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020129-'14-13,'14-11,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.200 C2=0.303
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(37.0=45.7),PF0002812=Cadherin=PU(31.6=37.0)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(15.8=19.7),PF0002812=Cadherin=PU(54.5=63.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGGAACTGGTCTGTGTCT
R:
TGAATCATGTGTGAGCTGGGC
Band lengths:
252-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]