MmuEX6038189 @ mm10
Exon Skipping
Gene
ENSMUSG00000061048 | Cdh3
Description
cadherin 3 [Source:MGI Symbol;Acc:MGI:88356]
Coordinates
chr8:106543651-106545227:+
Coord C1 exon
chr8:106543651-106543892
Coord A exon
chr8:106544117-106544262
Coord C2 exon
chr8:106545003-106545227
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTTCTCAACCTCCTTTCCAGCTA
3' ss Score
7.5
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GGTTTGGATTTTGAGGCTCAGGACCAACACACCCTGTATGTAGAAGTGACCAACGAGGCTCCCTTTGCAGTGAAGCTCCCGACAGCCACTGCCACCGTGGTGGTCCATGTGAAAGATGTCAACGAAGCCCCTGTGTTTGTTCCACCTTCCAAGGTCATTGAGGCCCAGGAAGGCATCTCTATTGGGGAACTGGTCTGCATCTATACCGCACAGGACCCAGACAAGGAGGACCAGAAGATCAG
Seq A exon
CTACACCATCTCGAGAGATCCAGCCAACTGGCTTGCTGTGGACCCAGACAGTGGTCAGATAACTGCCGCAGGCATCTTGGATCGTGAGGACGAGCAGTTTGTGAAAAACAATGTCTACGAAGTCATGGTTTTGGCCACAGACAGTG
Seq C2 exon
GAAACCCTCCCACCACCGGCACTGGGACCCTCCTGCTTACACTTACTGACATCAACGACCATGGCCCGATCCCTGAACCCAGGCAGATCATCATCTGTAACCAAAGCCCTGTGCCTCAAGTGCTGAACATCACTGACAAGGACCTGTCCCCCAACTCCTCCCCTTTCCAGGCCCAGCTAACACATGACTCAGATATCTACTGGATGGCAGAAGTCAGCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061048-'9-19,'9-16,14-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.240 C2=0.329
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(37.0=45.7),PF0002812=Cadherin=PU(31.6=37.0)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(15.8=19.7),PF0002812=Cadherin=PU(54.5=63.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCCTGTGTTTGTTCCA
R:
TGTTCAGCACTTGAGGCACAG
Band lengths:
248-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types