BtaEX6081125 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033248 | CDH3
Description
Bos taurus cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001244605]
Coordinates
chr18:36128830-36130616:+
Coord C1 exon
chr18:36128830-36129071
Coord A exon
chr18:36129466-36129611
Coord C2 exon
chr18:36130392-36130616
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTGCAACTTTTCTGCTCCAGTTA
3' ss Score
7.03
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGCTTGGATTTTGAGGCCAAAACCCAGCACACCCTGTACGTCGAAGTGATCAACGAGGTTCCCTTTGTGGTGAAACTCCCGACCTCCACAGCCACCGTAGTGGTCCTCGTGGAGGATGTGAATGAGCCACCCGTGTTTGTCCCCCCGTCCAAAGTCATCGAAATCCAGGAGGGCATCTCCACTGGGGAGCCTATTTGTGCCTACACTGCACGGGACCCAGACAAGGGGAGTCAGAAGATCAG
Seq A exon
TTACCACATCCTGAGAGACCCAGCAGGGTGGCTAGCGATGGACCCAGACAGTGGACAAGTCACTGCCGCAGGGGTCTTGGACCGTGAGGATGAGCAGTTTGTGAGAAACAACATCTACGAAGTCATGGTCTTGGCCACAGATGATG
Seq C2 exon
GGAGCCCTCCCACCACTGGCACAGGGACCCTCCTGCTAACACTGATGGACATCAATGACCACGGTCCGGTCCCCGAGCCCCGTCAGATCACCATCTGCAACCAAAGCCCTGTGCCCCAGGTGCTAAACATCACAGACAAGGACTTGTCCCCCCACACTGCCCCTTTCCAGGCCCAACTCACACATGACTCGGACGTCTATTGGACAGCAGAAGTCAACGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033248-'18-13,'18-12,19-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.280 C2=0.329
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(37.0=45.7),PF0002812=Cadherin=PU(31.6=37.0)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(15.8=19.7),PF0002812=Cadherin=PU(54.5=63.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAGCCTATTTGTGCCTA
R:
AGACGTCCGAGTCATGTGTGA
Band lengths:
258-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]