GgaEX7008540 @ galGal4
Exon Skipping
Gene
ENSGALG00000006708 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr13:13592652-13594605:+
Coord C1 exon
chr13:13592652-13592696
Coord A exon
chr13:13593248-13593310
Coord C2 exon
chr13:13594561-13594605
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTAAATCATCTTGCTTTCAGGGA
3' ss Score
7.31
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTGATGATGGCATCCCAGGGGAACCAGGACTTTCAGGCCCTAAG
Seq A exon
GGAGAAAAGGGAAGCACGGGTCTGAAGGGAGAGAATGGCACGGACGGCGCGCCAGGACCCAAG
Seq C2 exon
GGTGAACCCGGTGAGAAGGGAGGAGTCGGCTCCATCGGACCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006708-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.0=100),PF0139113=Collagen=PU(13.8=53.3)
A:
PF0139113=Collagen=FE(20.0=100),PF0139113=Collagen=FE(34.5=100)
C2:
PF0139113=Collagen=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGGCATCCCAGGGGA
R:
GGTCCGATGGAGCCGACTC
Band lengths:
83-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]