MmuEX6085234 @ mm10
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51563000-51565221:+
Coord C1 exon
chr11:51563000-51563053
Coord A exon
chr11:51564741-51564803
Coord C2 exon
chr11:51565177-51565221
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGGTATTTCCCCCATTTCAGGGT
3' ss Score
9.79
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
GGGGATGATGGGATGGCCAACCAGCCAGGACTCCCTGGACCCCCAGGGCCCAAG
Seq A exon
GGTGAGCCAGGGGATGTGGGGCCCCGAGGAGAGAATGGAGTGGACGGCATTCCTGGACTAAAG
Seq C2 exon
GGGGAGCCCGGTCACCCAGGCGTGGATGGAGCCACAGGGCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-'20-22,'20-20,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.5=100),PF0139113=Collagen=PU(18.0=61.1)
A:
PF0139113=Collagen=PD(15.2=57.1),PF0139113=Collagen=FE(32.8=100)
C2:
PF0139113=Collagen=FE(23.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGATGGGATGGCCAAC
R:
CTCCATCCACGCCTGGGT
Band lengths:
84-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types