GgaEX7009052 @ galGal4
Exon Skipping
Gene
ENSGALG00000026890 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:10242591-10243480:+
Coord C1 exon
chr20:10242591-10242692
Coord A exon
chr20:10242764-10242930
Coord C2 exon
chr20:10243350-10243480
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTCGGCTCCCCCAGGGC
3' ss Score
9.25
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCGTTCTGCGACATGGAGACAGACGGCGGCGGCTGGACGGTCATCCAGCTCCGCACCAACGGCAGCGTCAGCTTCCAGCGGGGCTGGAGGGAGTACAAGCAG
Seq A exon
GGCTTTGGGGACGCGGCGGGGGAGCACTGGCTGGGCAATGAAGCTGTGCACCTCCTGACGAGCCGGGAACCCTACGTGCTGCGCGTGGAGCTGCGGGACTGGGAGGGCAGCCAGGTCTATGCCCACTATGGGAGGTTCCAGCTGGACAGCGAGCGGCAGCTCTACAG
Seq C2 exon
GCTCTCACTGCAGGACTACAGCGGCACGGCCGGGCAGCAGAGCGGCTTGGCCATGCAAGGCACCAACTTCAGCACCCGCGATGCTGACAACGACAACTGCCTCTGCAAGTGTGCCCAGATGCTGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026890-'5-14,'5-7,6-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
PF0014713=Fibrinogen_C=FE(25.6=100)
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCTGCGACATGGAGACAG
R:
GACAGCATCTGGGCACACTTG
Band lengths:
227-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]