RnoEX0009296 @ rn6
Exon Skipping
Gene
ENSRNOG00000005008 | Angpt4
Description
angiopoietin 4 [Source:RGD Symbol;Acc:1307539]
Coordinates
chr3:147447134-147453748:+
Coord C1 exon
chr3:147447134-147447235
Coord A exon
chr3:147449445-147449611
Coord C2 exon
chr3:147453618-147453748
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTCTCCTCCCCACAGGGT
3' ss Score
14.14
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTGTTCTGTGACATGGAGACTGATGGAGGTGGCTGGACCCTCATCCAGCGCAGGGAGGATGGAAGCTTGAATTTCCAGAGGACTTGGGAGGAATACAAAGAG
Seq A exon
GGTTTTGGTAATGTGGCTAGAGAACACTGGCTGGGCAATGAGGCTGTGCACAGCCTCACCAGCAGAACGGCCTACTTGCTACGTGTGGAGCTGCATGACTGGGAAGGCCACCAGACCTCCATCCAGTATGAGAACTTCCAGCTGGGCAGCGAGAGGCAGCGGTACAG
Seq C2 exon
CCTCTCTGTGAATGACAGCAGCATCTCAGCAAGGCTCAAGAACAGCCTGGCTCCTCAGGGCACCAAGTTCAGTACCAAAGACATGGACAATGATAACTGCATGTGCAAATGTGCTCAGATGCTGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005008-'11-8,'11-6,13-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
PF0014713=Fibrinogen_C=FE(25.6=100)
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTGTGACATGGAGACTGA
R:
ACAGCATCTGAGCACATTTGC
Band lengths:
227-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]