MmuEX6105860 @ mm10
Exon Skipping
Gene
ENSMUSG00000027460 | Angpt4
Description
angiopoietin 4 [Source:MGI Symbol;Acc:MGI:1336887]
Coordinates
chr2:151936667-151943434:+
Coord C1 exon
chr2:151936667-151936768
Coord A exon
chr2:151938905-151939071
Coord C2 exon
chr2:151943304-151943434
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTCTCCTCCCCACAGGGT
3' ss Score
14.14
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTGTTCTGTGACATGGAGACTGATGGAGGTGGCTGGACCCTCATCCAGCACCGGGAGGATGGAAGCGTAAATTTCCAGAGGACCTGGGAAGAATACAAAGAG
Seq A exon
GGTTTTGGTAATGTGGCCAGAGAGCACTGGCTGGGCAATGAGGCTGTGCACCGCCTCACCAGCAGAACGGCCTACTTGCTACGCGTGGAACTGCATGACTGGGAAGGCCGCCAGACCTCCATCCAGTATGAGAACTTCCAGCTGGGCAGCGAGAGGCAGCGGTACAG
Seq C2 exon
CCTCTCTGTGAATGACAGCAGCAGTTCAGCAGGGCGCAAGAACAGCCTGGCTCCTCAGGGCACCAAGTTCAGCACCAAAGACATGGACAATGATAACTGCATGTGTAAATGTGCTCAGATGCTGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027460-'2-6,'2-5,7-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.433
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
PF0014713=Fibrinogen_C=FE(25.6=100)
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTGTGACATGGAGACTGA
R:
ACAGCATCTGAGCACATTTACACA
Band lengths:
227-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types