DreEX6024295 @ danRer10
Exon Skipping
Gene
ENSDARG00000076787 | angpt4
Description
angiopoietin 4 [Source:ZFIN;Acc:ZDB-GENE-110104-1]
Coordinates
chr6:52020247-52025432:+
Coord C1 exon
chr6:52020247-52020348
Coord A exon
chr6:52024371-52024537
Coord C2 exon
chr6:52025302-52025432
Length
167 bp
Sequences
Splice sites
3' ss Seq
GTTATATGTTGTCCTCACAGGGA
3' ss Score
9.12
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTCTTCTGTGATATGGTGACAAGTGGAGGTGGCTGGACTGTATTCCAGCACAGAGCCAATGGAAGTGTGAACTTCCAGAAAGGCTGGAAAGACTACAAGCTG
Seq A exon
GGATTTGGTGATCCTAGTGGAGAGCACTGGTTAGGTAATGAGGCCATTCACCTGATCACCAGTCAAGGCCAGTACTCCCTTCGAGTGGAACTGAAGGACTGGGAGGAGAACGGAGCATATGCACTGTATGACAAATTCCAGCTGACCAGTGAAAAACAGCAGTACAG
Seq C2 exon
ACTCTTGCTAGGGAGCCATAGTGGAACAGCAGGACAAAAAAGCAGCTTAGCATTAAACGGCACAGGCTTCAGCACTCGCGATGCCGACAACGACAAGTGCGAGTGCAAGTGTGCTCTCATGATGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076787-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
PF0014713=Fibrinogen_C=FE(25.6=100)
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAAGTGGAGGTGGCTG
R:
CTCCAGTCATCATGAGAGCACAC
Band lengths:
218-385
Functional annotations
There are 1 annotated functions for this event
PMID: 10706866
Angiopoietin-1 (Ang-1) is required for developing vessels, and its absence leads to defects in vessel remodeling. Ang-1 has been identified as the ligand for the tyrosine kinase receptor Tie-2, which is expressed specifically on endothelial cells and early hematopoietic cells. In studying the role of Tie-2 and Ang-1 in megakaryocytopoiesis, 3 alternatively spliced species of Ang-1 mRNA (Ang-1.3 kb, Ang-0.9 kb, and Ang-0.7 kb) were identified in addition to the full-length Ang-1 (Ang-1.5 kb), in the megakaryocyte cell line CHRF by reverse transcription?polymerase chain reaction (RT-PCR), and then cloned and sequenced. The function of the 1.5-kb (contains exon encoding fibronogen C-terminal domain (HsaEX0004096)), 1.3-kb (lacks aforementioned exon), and 0.9-kb (contains the aforementioned exon) isoforms was examined. Recombinant proteins Ang-1.5 and 0.9 kb bind strongly to the recombinant Tie-2 receptor (Tie-2-Fc), whereas the 1.3-kb isoform does not. The Ang-1.3 kb isoform binds to the 1.5-kb isoform. Ang-1.5 kb, but not the 1.3-kb and 0.9-kb isoforms, induces tyrosine phosphorylation of Tie-2 in human umbilical vein endothelial cells. These data suggest that isoforms 1.3 kb and 0.9 kb could serve as dominant negative molecules for the full-length Ang-1. Of note, the only difference between the 1.5-kb and 1.3-kb isoforms is the presence/absence of the exon encoding the fibronogen C-terminal domain (HsaEX0004096).
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]