GgaEX7009380 @ galGal4
Exon Skipping
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11196639-11197100:-
Coord C1 exon
chr15:11197019-11197100
Coord A exon
chr15:11196795-11196932
Coord C2 exon
chr15:11196639-11196721
Length
138 bp
Sequences
Splice sites
3' ss Seq
CACTCCCCTGTCCCCAACAGGTG
3' ss Score
10.17
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGACCTGGCTCCCCGGGACCCCTCAGGCACCTCAGACCCCTTTGTCCGGGTGTCGTGCTGTGGGCACACGCAGGAGACAGCC
Seq A exon
GTGATTAAGAAGACCCGCTTCCCACACTGGGATGAGGTGCTGGAGTTCGAGCTGGCACAGGATGAGCCAGGGGACAGCATGCTGAGCGTGGAGGTGTGGGACTGGGACATCGTGGGCAAGAATGACTTCCTGGGACAG
Seq C2 exon
GTAAAGGTCCCTCTGGATGCACCGGGTCCCACGGAGGGCTGGTTCCAGCTCCTGCCCTTCCCCAGCAGCACCAAGGAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(32.1=100)
A:
PF0016825=C2=FE(53.6=100)
C2:
PF0016825=C2=PD(1.2=3.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCAGGCACCTCAGAC
R:
CTGGCTCCTTGGTGCTGC
Band lengths:
146-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]