MmuEX6020432 @ mm9
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121112020-121113013:+
Coord C1 exon
chr5:121112020-121112101
Coord A exon
chr5:121112193-121112324
Coord C2 exon
chr5:121112928-121113013
Length
132 bp
Sequences
Splice sites
3' ss Seq
ACGGCCCTTTCTGCCCTTAGACC
3' ss Score
10.22
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGACCTGGCCCCCCGGGACATCTCTGGCACATCGGACCCATTTGCCCGTGTGTTCTGGGGCAACCATAGTTTGGAAACTTCG
Seq A exon
ACCATCAAGAAGACCCGCTTTCCACACTGGGATGAGGTGTTGGAGCTGCGGGAGGCTCCGGGGACCACGTCCCCGCTGCGAGTGGAACTCTGGGATTGGGACATGGTGGGCAAGAATGACTTCCTGGGTATG
Seq C2 exon
GTGGAGTTCACCCCACAGACCCTGCAGCAGAAGCCACCTAATGGCTGGTTCCGGCTCCTGCCCTTTCCTAGAGCTGAGGATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-'11-12,'11-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(32.9=100)
A:
PF0016825=C2=FE(52.4=100)
C2:
PF0016825=C2=PD(1.2=3.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACATCTCTGGCACATCG
R:
CCAGAATCCTCAGCTCTAGGA
Band lengths:
154-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: