RnoEX6064623 @ rn6
Exon Skipping
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41433058-41434065:-
Coord C1 exon
chr12:41433984-41434065
Coord A exon
chr12:41433766-41433897
Coord C2 exon
chr12:41433058-41433143
Length
132 bp
Sequences
Splice sites
3' ss Seq
ACAACTCTTTCGGCCCTTAGACC
3' ss Score
7.54
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGACCTGGCCCCTCGGGACATCTCTGGCACATCGGACCCATTTGCCCGTGTGTTCTGGGGCAGCCGTAGTTTGGAAACTTCG
Seq A exon
ACCATCAAGAAGACCCGATTCCCACATTGGGATGAGGTGCTGGAACTACGAGAGGCTCCGGGAACCACATCCCCGCTGCGAGTGGAACTCTGGGATTGGGACATGGTGGGCAAAAATGACTTCCTGGGCATG
Seq C2 exon
GTGGAATTCACCCCACAGACCCTCCAGCAGAAGCCACCCAATGGCTGGTTCCGTCTCCTGCCTTTTCCTAGAGCTGAGGATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374-'13-13,'13-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(32.9=100)
A:
PF0016825=C2=FE(52.4=100)
C2:
PF0016825=C2=PD(1.2=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGACATCTCTGGCACATC
R:
CCAGAATCCTCAGCTCTAGGA
Band lengths:
156-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]