HsaEX0052389 @ hg19
Exon Skipping
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:9873]
Coordinates
chr12:113553739-113557248:-
Coord C1 exon
chr12:113557167-113557248
Coord A exon
chr12:113556933-113557064
Coord C2 exon
chr12:113553739-113553856
Length
132 bp
Sequences
Splice sites
3' ss Seq
ACCACTTCCTTCGCCCTCAGACC
3' ss Score
10.88
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGACCTGGCTCCCAGAGACATCTCTGGCACATCTGACCCATTTGCACGTGTGTTTTGGGGCAGCCAGAGCTTGGAGACCTCA
Seq A exon
ACCATCAAGAAGACTCGCTTCCCGCACTGGGATGAAGTGCTGGAGCTGCGGGAGATGCCAGGTGCCCCGTCCCCACTGCGGGTGGAGCTCTGGGACTGGGACATGGTGGGCAAGAATGACTTCTTGGGCATG
Seq C2 exon
GGGGAACCTGGGTGCCCTGCGAGTGAAGGTACGCCTGATTGAGGACCGCGTCCTGCCCTCCCAGTGCTACCAGCCTCTCATGGAGCTGCTCATGGAGTCTGTGCAGGGGCCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344_MULTIEX1-6/7=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(32.9=100)
A:
PF0016825=C2=FE(52.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCCCAGAGACATCTC
R:
CCCCTGCACAGACTCCATGAG
Band lengths:
186-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)