GgaEX7009423 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1068373-1070675:+
Coord C1 exon
chr18:1068373-1068533
Coord A exon
chr18:1069620-1069776
Coord C2 exon
chr18:1070571-1070675
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTGCTGTGGAAGATG
3' ss Score
4.15
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGGACAACGCGCAGGCGTTCGTTTGGCTGTCGCAGCTCCGACACAGGTGGTCAGATGAGGAGCGGCACTGCTTCGCCAACATCTGCGATGCCCAGTTCCTCTACTCCTATGAGTATCTTGGCAATACCCCTCGGCTTGTGATCACTCCACTGACAGACAG
Seq A exon
ATGTTACATCACCCTGACCCAGTCTCTGCATCTGACCATGAGCGGAGCACCTGCGGGCCCTGCAGGCACCGGCAAGACGGAGACTACGAAAGACTTGGGGCGAGCCCTGGGCATCATGGTGTATGTGTTTAACTGCTCTGAGCAGATGGACTACAAG
Seq C2 exon
TCTTGTGGGAATATTTACAAAGGCCTTTCCCAGACGGGAGCCTGGGGCTGTTTTGATGAGTTTAACAGGATCTCAGTTGAGGTCCTTTCTGTGGTGGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.151 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGTTCGTTTGGCTGTC
R:
TGTACAGCCACCACAGAAAGG
Band lengths:
252-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]