HsaEX6021150 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11705025-11727922:+
Coord C1 exon
chr17:11705025-11705185
Coord A exon
chr17:11719334-11719490
Coord C2 exon
chr17:11727818-11727922
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCCCGTGTTTGGCAGGTG
3' ss Score
11.12
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTAGACAATGCCCAGGCTTTCCTCTGGCTGTCTCAGCTGCGCCATCGTTGGGATGACGAGGTCAAACACTGCTTTGCCAACATCTGTGATGCCCAGTTTTTGTATTCCTATGAGTACCTGGGAAACACACCTCGCTTGGTGATCACACCTTTGACTGACAG
Seq A exon
GTGCTACATCACCCTCACCCAGTCCCTGCACCTGACCATGAGTGGGGCTCCCGCAGGACCTGCAGGCACAGGCAAGACCGAGACCACCAAGGACCTGGGCCGCGCACTGGGCATCCTGGTCTATGTGTTCAACTGCTCGGAGCAGATGGATTACAAG
Seq C2 exon
TCTTGTGGCAACATCTACAAAGGCCTTGCTCAGACTGGTGCCTGGGGCTGCTTTGATGAGTTTAATCGAATCTCCGTGGAGGTCTTGTCAGTGGTGGCAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'51-48,'51-45,54-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATGCCCAGGCTTTCCTC
R:
CTGACAAGACCTCCACGGAGA
Band lengths:
249-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains