BtaEX6026621 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30553890-30558005:+
Coord C1 exon
chr4:30553890-30554050
Coord A exon
chr4:30557587-30557743
Coord C2 exon
chr4:30557860-30558005
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTTTTGCTTAAAGGTG
3' ss Score
8.97
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTCGTCACTCCCGAGGCTTTTGCTTGGCTCTCTCAGCTTCGTCACCGGTGGGAGGATACCCAGAAACATTGTCTCGTAAATATCTGCGATGCCCAGTTCCAGTACTTCTATGAATATTTAGGAAACAGCCCTCGACTTGTGATCACTCCTCTGACTGACAG
Seq A exon
GTGTTACATTACTTTGACTCAGTCCCTTCATCTCACCATGAGTGGGGCTCCAGCTGGCCCGGCTGGAACAGGAAAAACAGAAACCACCAAAGACCTTGGCCGTGCCCTTGGCATGATGGTTTATGTATTCAACTGTTCAGAGCAAATGGACTACAAG
Seq C2 exon
TCCATAGGAAGTATCTATAAGGGACTGGTGCAGACAGGAGCCTGGGGCTGCTTTGACGAGTTCAATCGAATCTCTGTGGAAGTTCTGTCAGTGGTGTCGGTGCAAGTGAAAATGATACACGATGCCATCAGAAACAGGAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'43-43,'43-42,44-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.151 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTTTGCTTGGCTCTCTC
R:
CACCGACACCACTGACAGAAC
Band lengths:
250-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]