HsaEX6007407 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21683784-21687527:+
Coord C1 exon
chr7:21683784-21683944
Coord A exon
chr7:21687099-21687255
Coord C2 exon
chr7:21687382-21687527
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTATTGCTTAAAGGTG
3' ss Score
7.31
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTTGTCAGTCCCCAAGCTTTTACATGGCTGTCTCAACTTCGTCACCGATGGGAGGATACCCAGAAACACTGCTTTGTTAATATTTGTGATGCCCAGTTCCAGTACTTCTATGAATACTTAGGAAACAGCCCTCGACTAGTGATCACTCCTCTAACTGACAG
Seq A exon
GTGTTATATTACCTTAACTCAATCACTTCATCTAACCATGAGTGGGGCTCCTGCTGGCCCAGCTGGTACCGGGAAAACAGAGACCACCAAAGACCTAGGACGTGCCCTTGGCATGATGGTCTATGTATTCAACTGTTCAGAGCAAATGGACTACAAA
Seq C2 exon
TCCATAGGCAATATCTATAAGGGATTGGTGCAGACAGGAGCTTGGGGCTGCTTTGATGAGTTCAACCGAATCTCTGTGGAAGTTCTGTCAGTGGTGGCAGTACAAGTGAAAATGATTCATGATGCCATCAGAAACAGGAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'56-53,'56-52,57-53=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.151 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTCTCAACTTCGTCACC
R:
ACTTGTACTGCCACCACTGAC
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains