HsaEX6007407 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21723402-21727145:+
Coord C1 exon
chr7:21723402-21723562
Coord A exon
chr7:21726717-21726873
Coord C2 exon
chr7:21727000-21727145
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTATTGCTTAAAGGTG
3' ss Score
7.31
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTTGTCAGTCCCCAAGCTTTTACATGGCTGTCTCAACTTCGTCACCGATGGGAGGATACCCAGAAACACTGCTTTGTTAATATTTGTGATGCCCAGTTCCAGTACTTCTATGAATACTTAGGAAACAGCCCTCGACTAGTGATCACTCCTCTAACTGACAG
Seq A exon
GTGTTATATTACCTTAACTCAATCACTTCATCTAACCATGAGTGGGGCTCCTGCTGGCCCAGCTGGTACCGGGAAAACAGAGACCACCAAAGACCTAGGACGTGCCCTTGGCATGATGGTCTATGTATTCAACTGTTCAGAGCAAATGGACTACAAA
Seq C2 exon
TCCATAGGCAATATCTATAAGGGATTGGTGCAGACAGGAGCTTGGGGCTGCTTTGATGAGTTCAACCGAATCTCTGTGGAAGTTCTGTCAGTGGTGGCAGTACAAGTGAAAATGATTCATGATGCCATCAGAAACAGGAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'38-38,'38-37,39-38=AN
Average complexity
A_C1
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.151 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTCTCAACTTCGTCACC
R:
ACTTGTACTGCCACCACTGAC
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)