MmuEX6086214 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66053001-66072102:-
Coord C1 exon
chr11:66071942-66072102
Coord A exon
chr11:66060969-66061125
Coord C2 exon
chr11:66053001-66053105
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTCCTATGTTTGCAGGTG
3' ss Score
11.71
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTGACAATGCCCAGGCTTTCCTCTGGCTGTCACAGCTACGACATCGTTGGGATGATGAGGCCAAGCACTGCTTTGCTAACATCTGTGACGCCCAGTTTCTATATTCCTATGAGTACTTGGGAAATACACCTCGCCTAGTGATCACGCCTCTGACTGATAG
Seq A exon
GTGCTACATCACTCTCACCCAGTCTCTACACTTGACCATGAGTGGGGCTCCAGCAGGACCTGCAGGCACAGGCAAGACAGAGACCACCAAGGACCTGGGCAGAGCACTCGGCATCATGGTCTATGTGTTTAACTGTTCTGAGCAGATGGACTACAAG
Seq C2 exon
TCCTGTGGCAACATCTACAAAGGCCTGGCTCAGACTGGTGCCTGGGGCTGTTTTGATGAGTTTAACCGAATCTCTGTGGAGGTCTTGTCGGTGGTGGCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'29-35,'29-34,31-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.218 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(40.4=35.2)
A:
PF127742=AAA_6=PD(17.0=18.2)
C2:
PF127742=AAA_6=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAATGCCCAGGCTTTCC
R:
CCGACAAGACCTCCACAGAGA
Band lengths:
251-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types