RnoEX6047732 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52572986-52592952:-
Coord C1 exon
chr10:52592792-52592952
Coord A exon
chr10:52580689-52580845
Coord C2 exon
chr10:52572986-52573090
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCCTGTGTTTTGCAGGTG
3' ss Score
12.94
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTTGACAATGCCCAGGCTTTCCTCTGGCTGTCACAGCTACGCCATCGTTGGGATGATGAGGCCAAGCACTGCTTTGCTAACATCTGCGATGCCCAGTTTCTATATTCCTATGAGTACCTGGGAAATACCCCTCGCCTGGTGATCACGCCTTTGACTGATAG
Seq A exon
GTGCTACATCACTCTCACTCAGTCTCTACACTTGACCATGAGTGGGGCTCCAGCCGGACCTGCAGGCACAGGCAAGACAGAGACCACCAAGGACCTGGGCCGAGCACTGGGCATCATGGTCTATGTGTTTAACTGTTCCGAGCAGATGGACTACAAG
Seq C2 exon
TCCTGTGGCAACATCTACAAAGGCCTGGCTCAGACTGGTGCCTGGGGCTGTTTTGATGAATTTAACCGAATCTCTGTGGAGGTCTTGTCAGTGGTGGCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'36-34,'36-33,38-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.151 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(79.2=35.2)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(14.7=100)
Main Skipping Isoform:
ENSRNOT00000005583fB4271
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAATGCCCAGGCTTTCC
R:
ACCACTGACAAGACCTCCACA
Band lengths:
255-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]