GgaEX7009490 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8202406-8205387:-
Coord C1 exon
chr18:8205116-8205387
Coord A exon
chr18:8203113-8203222
Coord C2 exon
chr18:8202406-8202616
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTTTTTTTCTAGGTA
3' ss Score
12.24
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGAAATCTGCCTGGGCAACTCCACAACAATGTGCTCTGTTTGCTTTTTATAACGTAAATAAATCTGAAGCTCTGCCAAAGAGGAAGGGGGGGAGCGAGGGATTGCGTGAGGAATGCCTTTTGGCACAAATGTCCCTGTGAAGGAGTGGTTGTGCGAAGAGAAGGGCTCCGAGCAGCACTGCAACCACTGGCCAGAGTCTCCCCGGCAGCCCCACGTCCAGGGGCGCATTGCACAGAGCGAGCTTTGGATCCCTGTCAAACCCTCCCATTAAG
Seq A exon
GTACAAAGATGAGGAGACCTAAGAGAAATCTGAGTGTGTTCCAGCAAACTAAAATTCTCTTGTGGAAAAATGTGCTTATCAAATGGAGGATGAAAATGCAGAGTTTTCAG
Seq C2 exon
GAGTGGATGCTGTCCCTGCTCTTCCTGCCACTGATGTTCATTGTGGGCCACTTCATGATGTACATGCCCTACCCCGAGGTGCCACACAAACACCTGGGGCAGCTGGATGATCCTGCCTACAATGCCACCGGAGTCACCATTGCTTTCACACCCATCACTGCAGCCACCAGGCAGATAATGAACACAGTGGCCTCAAAGTCTGTGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(18.2=98.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTTGTGCGAAGAGAAGG
R:
GGTGGCATTGTAGGCAGGATC
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]