MmuEX0003035 @ mm10
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109977770-109995845:-
Coord C1 exon
chr11:109995612-109995845
Coord A exon
chr11:109981678-109981779
Coord C2 exon
chr11:109977770-109977873
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCCCCTTTCTCATTAAATAGGGC
3' ss Score
9.95
5' ss Seq
ATGGTACAG
5' ss Score
3.5
Exon sequences
Seq C1 exon
GGAGCAGCCATGCGCGGTCACGTGTCCGTGGTGTTTGGCAAGACCAACCCAGAGCTGAGATCATAAACTCCCGCTGAGAGCAGCTTTCACCAGTCGCGTTCACGGACAGCAAACAGTTAAACTCTAGAAAGGTGCTGGAGAATAGGGGGAGGGGAAGGTGTCTCACTTTATTATTCTAAACAGAGCCCGTGATTAAATGGTGCGGCTGGAGTCCCTGCTTGGCATTTCCCGAAA
Seq A exon
GGCAACATGATCAAGAGAGAGATAAGTGTGCGCCAACAAACTTGTGCTTTATTACAGAAGAACCTTCTTAAGAAATGGAGACTGAAAAGGGAGTCCTTGATG
Seq C2 exon
CTCATTGTGATGGACTGTATGAAGATGTCAACTGTCTGATAGCCATATTCTGGAAGGAAGGATTTGTGGCTCTTCAAGCTGCCATCAATGCTGCCATCATAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620_MULTIEX5-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
C2:
PF126982=ABC2_membrane_3=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCAGCTTTCACCAGTCG
R:
AGCATTGATGGCAGCTTGAAGA
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types