MmuEX0003025 @ mm10
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109981678-109995845:-
Coord C1 exon
chr11:109995612-109995845
Coord A exon
chr11:109982167-109982268
Coord C2 exon
chr11:109981678-109981779
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTCCGTTCTGCTAGAGC
3' ss Score
7.68
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGAGCAGCCATGCGCGGTCACGTGTCCGTGGTGTTTGGCAAGACCAACCCAGAGCTGAGATCATAAACTCCCGCTGAGAGCAGCTTTCACCAGTCGCGTTCACGGACAGCAAACAGTTAAACTCTAGAAAGGTGCTGGAGAATAGGGGGAGGGGAAGGTGTCTCACTTTATTATTCTAAACAGAGCCCGTGATTAAATGGTGCGGCTGGAGTCCCTGCTTGGCATTTCCCGAAA
Seq A exon
AGCTTGGATTCTGTCTGTCTCCTAAACTCTCCAAGAGTTCATATTCTAGACACTTGGCTGCCATGTGGTGATGTTAAGAGTGGTGGAACCCTAGAGGAAGTG
Seq C2 exon
GGCAACATGATCAAGAGAGAGATAAGTGTGCGCCAACAAACTTGTGCTTTATTACAGAAGAACCTTCTTAAGAAATGGAGACTGAAAAGGGAGTCCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620_MULTIEX5-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACCCAGAGCTGAGATCA
R:
AAAGCACAAGTTTGTTGGCGC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types