BtaEX6091185 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62099290-62106594:+
Coord C1 exon
chr19:62099290-62099433
Coord A exon
chr19:62104443-62104544
Coord C2 exon
chr19:62106387-62106594
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTTAAAATAAACAGGTC
3' ss Score
7.23
5' ss Seq
TCGGTACGG
5' ss Score
8.77
Exon sequences
Seq C1 exon
GTTCTACACGGAACTATTCACAATAAACATGAAATTAAAAGCGTTGATGTAGTAGTGACCCAAAAGGAATGTGAATTGTTCTCCAGGACCCGCGGAGACCCGTGGATGAACTGTTTCTGGAGTCTTGCTCCAGCTTTCCTGAGA
Seq A exon
GTCAGGATGAGCAAGAGGCACTTCAGCGTGGGCCAGCAAACGAGGGCGCTTCTTGGCAAGAATTTTCTTAAGAAATGGAGGATGAAAAGAGAGACCTTGTCG
Seq C2 exon
GAATGGCTCTTCTCCTGTCTCCTAGTACTGTTTGCTCATCTGTTTTCCTCTAATTTACACCAAGTTAATGACTTCCCTCAACTGCCCGCTGTGAACTTGGGACGGGTAGATAATTTTAATGATTCTGATTACATTATTGCATTTGCTCCTGAATCCAAGACCACCCAGGAGATAATGAACAAGTTGGCTTCTGCCCCTTTCATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'0-7,'0-6,5-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
C2:
PF126982=ABC2_membrane_3=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGTTCTCCAGGACCCGC
R:
TCCTGGGTGGTCTTGGATTCA
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]