HsaEX6024412 @ hg19
Exon Skipping
Gene
ENSG00000154258 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:39]
Coordinates
chr17:67045424-67057136:-
Coord C1 exon
chr17:67057007-67057136
Coord A exon
chr17:67047172-67047280
Coord C2 exon
chr17:67045424-67045631
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTGTCTTTTTAAAGGAA
3' ss Score
11.48
5' ss Seq
TTGGTATGC
5' ss Score
5.91
Exon sequences
Seq C1 exon
ATTCACAATGAATGTGAAATTAAAAGCATGATGTAGTAGTGACCCAAAAGGAATGTGAATTCTCCTCCAGAACATGCAGAGACCCATGGATGAACTGTGTTTCTAGATTTTTCCTCCAGCTTTCCTGAGA
Seq A exon
GAAACAGGTCAAAATGAGCAAGAGACGCATGAGCGTGGGTCAGCAAACATGGGCTCTTCTCTGCAAGAACTGTCTCAAAAAATGGAGAATGAAAAGACAGACCTTGTTG
Seq C2 exon
GAATGGCTCTTTTCATTTCTTCTGGTACTGTTTCTGTACCTATTTTTCTCCAATTTACATCAAGTTCATGACACTCCTCAAATGTCTTCAATGGATCTGGGACGTGTAGATAGTTTTAATGATACTAATTATGTTATTGCATTTGCACCTGAATCCAAAACTACCCAAGAGATAATGAACAAAGTGGCTTCAGCCCCATTCCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154258-'0-2,'0-0,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF126982=ABC2_membrane_3=PU(1.3=15.6)
C2:
PF126982=ABC2_membrane_3=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCAGAGACCCATGGATG
R:
GCTGAAGCCACTTTGTTCATT
Band lengths:
253-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)