MmuEX0003040 @ mm9
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110024485-110029510:-
Coord C1 exon
chr11:110029265-110029510
Coord A exon
chr11:110027211-110027356
Coord C2 exon
chr11:110024485-110024692
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACAACATTTTTCTATTTCAGACT
3' ss Score
9.8
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGAGGAACTGGCGGGAGGCAGAGAAAGGAAAAACAGTGGAGGAGTGTGAGCAGAGCTTTTGGCAGCCAGTCTGAACCCTCAGAAGAATTCTCTTCAGAAACCAGAGTAAAACAGAACCAACCGTCCACGATAAGGAAAATCAAAATCAACATGTAGCAGTGACTCGAAAGAAGAAACGGGACTTCTCCTCCGGGACAAAGATCTGTGGATGGACTTCTAGAAGATTCTTGCTTCGGCTTCCTCAGA
Seq A exon
ACTTTCACATCTACTTCCTTGATGTCCTTTAACAAAACAAACAAGTCAAAATGAGGAAGAGACACTTGAGACTGGGTCAGCAAATGTGGGCGCTTCTCTGCAAGAACTGGCTCAGAAAGTTCAGGATGAGAAGAGAGACCCTCCTG
Seq C2 exon
GAATGGCTTTTCTCACTTCTTCTAATATTGTTTGTATATCAATTATCCTCCAATTTGCATCAAGTTCATGACGCTCCTGAAATGTCTGTGGTGGATCTGGGACGTGTTGATAACTTTAACGATTCTAATTATATGATGGTGTTTGCTCCTGAGTCCGAAGCCACCCATGAGATAATGAACAAAGTGGCCTCAGCTCCATTCATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
C2:
PF126982=ABC2_membrane_3=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGGACAAAGATCTGTGGA
R:
AATGGAGCTGAGGCCACTTTG
Band lengths:
258-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: