GgaEX7009660 @ galGal4
Exon Skipping
Gene
ENSGALG00000028529 | PTGDS
Description
prostaglandin-H2 D-isomerase precursor [Source:RefSeq peptide;Acc:NP_989590]
Coordinates
chr17:510105-511024:-
Coord C1 exon
chr17:510911-511024
Coord A exon
chr17:510258-510397
Coord C2 exon
chr17:510105-510126
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGAGCAGAGTTTGTGTGCAGCTT
3' ss Score
-1.74
5' ss Seq
CAAGTACGG
5' ss Score
5.98
Exon sequences
Seq C1 exon
TGCTCGGCTGGGGACATGCAAGCCATGCTGCTCAGCATCCTGGGGCTGGCCCTGCTTGGGGCTCTGCACGCGCAGAACAGCATTCCTGTGCAAGCTGACTTCCAGCAGGACAAG
Seq A exon
CTTGCGGGGAGATGGTACAGCATCGGCCTGGCCTCCAACTCCAACTGGTTCAAGGACAAGAAGCACCTGCTGAAGATGTGTACCACAGACATTGCTGTCACTGCAGATGGCAACATGGAGGTCACCTCCACCTACCCCAA
Seq C2 exon
GGGTGAACAGTGCGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028529-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006118=Lipocalin=PU(31.5=95.7)
C2:
PF0006118=Lipocalin=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGGGACATGCAAG
R:
CTCTTCTCGCACTGTTCACCC
Band lengths:
131-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]