MmuEX0037683 @ mm10
Exon Skipping
Gene
ENSMUSG00000015090 | Ptgds
Description
prostaglandin D2 synthase (brain) [Source:MGI Symbol;Acc:MGI:99261]
Coordinates
chr2:25468833-25469734:-
Coord C1 exon
chr2:25469560-25469734
Coord A exon
chr2:25468988-25469127
Coord C2 exon
chr2:25468833-25468909
Length
140 bp
Sequences
Splice sites
3' ss Seq
CAGGCATCCACTGGTCGCAGTTC
3' ss Score
1.1
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TTTTCCTTGCTTTGTCCACATTGCTGGCATCAGGCCCAGGCACCTGCTCTGCTCTGAGCAAATGGCTGCTCTTCGCATGCTGTGGATGGGTTTGGTCCTCCTGGGTCTCTTGGGATTCCCACAGACCCCAGCCCAGGGCCATGACACAGTGCAGCCCAACTTTCAACAAGACAAG
Seq A exon
TTCCTGGGGCGCTGGTACAGCGCGGGCCTCGCCTCCAACTCAAGCTGGTTCCGGGAGAAGAAAGCTGTATTGTATATGTGCAAGACAGTGGTAGCCCCCTCCACAGAAGGCGGCCTCAATCTCACCTCTACCTTCCTCAG
Seq C2 exon
GAAAAACCAGTGTGAGACCAAGATCATGGTACTGCAGCCTGCGGGGGCTCCTGGACACTACACCTACAGCAGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015090_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF0006118=Lipocalin=PU(31.0=95.7)
C2:
PF0006118=Lipocalin=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGCTTTGTCCACATTGCT
R:
GCTGCTGTAGGTGTAGTGTCC
Band lengths:
245-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types