HsaEX0050787 @ hg19
Exon Skipping
Gene
ENSG00000107317 | PTGDS
Description
prostaglandin D2 synthase 21kDa (brain) [Source:HGNC Symbol;Acc:9592]
Coordinates
chr9:139871956-139873853:+
Coord C1 exon
chr9:139871956-139872144
Coord A exon
chr9:139873445-139873584
Coord C2 exon
chr9:139873675-139873853
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTGGGGGTCGCTCGCCGCAGTTC
3' ss Score
3.41
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GCTCCTCCTGCACACCTCCCTCGCTCTCCCACACCACTGGCACCAGGCCCCGGACACCCGCTCTGCTGCAGGAGAATGGCTACTCATCACACACTGTGGATGGGACTGGCCCTGCTGGGGGTGCTGGGCGACCTGCAGGCAGCACCGGAGGCCCAGGTCTCCGTGCAGCCCAACTTCCAGCAGGACAAG
Seq A exon
TTCCTGGGGCGCTGGTTCAGCGCGGGCCTCGCCTCCAACTCGAGCTGGCTCCGGGAGAAGAAGGCGGCGTTGTCCATGTGCAAGTCTGTGGTGGCCCCTGCCACGGATGGTGGCCTCAACCTGACCTCCACCTTCCTCAG
Seq C2 exon
GAAAAACCAGTGTGAGACCCGAACCATGCTGCTGCAGCCCGCGGGGTCCCTCGGCTCCTACAGCTACCGGAGTCCCCGTGAGTGGGGCCTCCACCGGCCCCCTGGGCCCAGCCTGGGGGCGACACTTGCCGGGACGACTCTGGGCCAGCCCCCTGCCGCGGAGATCCATGGGGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107317-'0-5,'0-3,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.021 C2=0.293
Domain overlap (PFAM):
C1:
NO
A:
PF0006118=Lipocalin=PU(56.2=95.7)
C2:
PF0006118=Lipocalin=PD(42.5=55.7),PF0006118=Lipocalin=PU(13.6=13.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTCTCCCACACCACT
R:
GGACTCCGGTAGCTGTAGGAG
Band lengths:
245-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)