RnoEX0070948 @ rn6
Exon Skipping
Gene
ENSRNOG00000015550 | Ptgds
Description
prostaglandin D2 synthase [Source:RGD Symbol;Acc:3433]
Coordinates
chr3:2688186-2689084:-
Coord C1 exon
chr3:2688912-2689084
Coord A exon
chr3:2688368-2688507
Coord C2 exon
chr3:2688186-2688262
Length
140 bp
Sequences
Splice sites
3' ss Seq
CGGGCATCCACTGGTCACAGTTC
3' ss Score
2.14
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTCCTTGCTTTGCCCACGTTGCTGGCCTCAGGCTCAGACACCTGCTCTACTCCAAGCAAATGGCTGCTCTTCCAATGCTGTGGACCGGGCTGGTCCTCTTGGGTCTCTTGGGATTTCCACAGACCCCAGCCCAGGGCCATGACACAGTGCAGCCCAACTTTCAACAAGACAAG
Seq A exon
TTCCTGGGGCGCTGGTACAGCGCGGGCCTCGCCTCCAATTCAAGCTGGTTCCGGGAGAAGAAAGAGCTACTGTTTATGTGCCAGACAGTGGTAGCTCCCTCCACAGAAGGCGGCCTCAACCTCACCTCTACCTTCCTAAG
Seq C2 exon
GAAAAACCAGTGTGAGACCAAGGTGATGGTACTGCAGCCGGCAGGGGTTCCCGGACAGTACACCTACAACAGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015550-'2-5,'2-1,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006118=Lipocalin=PU(31.0=95.7)
C2:
PF0006118=Lipocalin=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTGCTTTGCCCACGTT
R:
GGGGGCTGTTGTAGGTGTACT
Band lengths:
250-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]