GgaEX7009847 @ galGal4
Exon Skipping
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8289252-8289778:-
Coord C1 exon
chr17:8289614-8289778
Coord A exon
chr17:8289449-8289536
Coord C2 exon
chr17:8289252-8289337
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCGCACATCTCGCCTTGCAGCCT
3' ss Score
7.12
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GTTTCTGTGCGGAAAGGAGATCAAGAAGAAGAAATGCATCTTCCGCCTGCGGATCCGCGTCCCGCCAAACCCCCCCAGCAAAGTGCTGCCAGAGAAGGCCCCGGGCGAGGGCAGCTCCTGCGAGCTGAAGAGGAGAGGGAAGAGCAGATACGTGCACAAGGACAG
Seq A exon
CCTGCTCCCGGGGCAGCTCCAGCAGCAGAAGCGGCGTGCGGTGCGGTGGAAGAGGGCCAAGTTCCTGCTGGAGGACGCCATCCCCAGC
Seq C2 exon
AGCGACTTCACCTCGGCCTGGAGCACCAACCACCACCTGGCCAGCATCTTCGACTTCACACTGGATGAGATTCAGAGCCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATGCATCTTCCGCCTGC
R:
GTGGTGGTTGGTGCTCCAG
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]