BtaEX6036252 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112145964-112147961:-
Coord C1 exon
chr8:112147800-112147961
Coord A exon
chr8:112146934-112147021
Coord C2 exon
chr8:112145964-112146049
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTCTGTCTCCACAGTTT
3' ss Score
11.72
5' ss Seq
AGTGTTAGT
5' ss Score
-4.97
Exon sequences
Seq C1 exon
GTTCCTCTGCGGCAAGGAGATCAAGAAGAAGAAGTGCATCTTCCGCCTGCGCATCCGTGTCCCACCCAACCCGCCCGGGAAGCTGCTGCCCGACAAGGGCCTGGCGCCCCCCGAGCACGGCGCCGCCTCCGAGCTGCGGAGGAGAGGGAAGAGCAAGCCCAG
Seq A exon
TTTGTTGCCTCATGAATTCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGACGCTATCCCCAGT
Seq C2 exon
AGCGACTTCACCTCCGCTTGGAGCACCAATCACCACCTGGCCAGCATATTTGACTTCACACTGGACGAGATCCAGAGTTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958-'12-14,'12-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.491 A=0.300 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGCATCTTCCGCCTGC
R:
AAATATGCTGGCCAGGTGGTG
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]