HsaEX0046985 @ hg19
Exon Skipping
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:24566]
Coordinates
chr9:123623367-123625027:-
Coord C1 exon
chr9:123624866-123625027
Coord A exon
chr9:123624196-123624283
Coord C2 exon
chr9:123623367-123623452
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTTCTGTCTCCACAGTTT
3' ss Score
11.45
5' ss Seq
AGTGTTAGT
5' ss Score
-4.97
Exon sequences
Seq C1 exon
GTTCCTCTGCGGCAAGGAGATCAAGAAGAAGAAGTGCATCTTCCGCCTGCGCATCCGCGTCCCACCCAACCCGCCAGGGAAGCTGCTGCCTGACAAAGGACTGCTGCCAAATGAGAACAGCGCCTCCTCTGAGCTGCGTAAGAGAGGAAAGAGCAAGCCTGG
Seq A exon
TTTGTTGCCTCACGAATTCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGATGCTATTCCCAGT
Seq C2 exon
AGTGACTTCACCTCAGCCTGGAGCACCAACCACCACCTGGCTAGCATATTTGACTTCACGCTGGATGAAATTCAAAGTTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403-'25-25,'25-24,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.418 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCGGCAAGGAGATCAAG
R:
CTCCAGGCTGAGGTGAAGTCA
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)