RnoEX0065325 @ rn6
Exon Skipping
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13961570-13963167:-
Coord C1 exon
chr3:13963006-13963167
Coord A exon
chr3:13962401-13962488
Coord C2 exon
chr3:13961570-13961655
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTTCTGTCTCCACAGTTT
3' ss Score
11.68
5' ss Seq
AGTGTTAGT
5' ss Score
-4.97
Exon sequences
Seq C1 exon
GTTCCTGTGTGGCAAGGAGATTAAGAAGAAGAAATGCATCTTCCGACTGCGCGTCCGTGTCCCGCCCGCCCCTCCAGGAAAACTGCTTCCGGACAGGGCACAGATGCCAAGTGACAAAGGGACCTTTGAGCTGCTTCGTAAGAGAGGAAAGAGCAAGCCTGG
Seq A exon
TTTGTTGCCTCAGGAATCCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGATGCTATTCCCAGT
Seq C2 exon
AGTGACTTCACCTCAGCCTGGAGCACGGACCACCACCTGGCCAGCATATTCGACTTTACACTGGATGAAATTCAGAGTTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=67=67%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.291 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGCATCTTCCGACTGCG
R:
GAATATGCTGGCCAGGTGGTG
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]