DreEX6048583 @ danRer10
Exon Skipping
Gene
ENSDARG00000078050 | phf19
Description
PHD finger protein 19 [Source:ZFIN;Acc:ZDB-GENE-081105-128]
Coordinates
chr8:12326774-12337395:-
Coord C1 exon
chr8:12337246-12337395
Coord A exon
chr8:12335582-12335651
Coord C2 exon
chr8:12326774-12326859
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATCATTTTCCTGTGTTGCAGTAA
3' ss Score
7.84
5' ss Seq
AACGTAAGC
5' ss Score
7.35
Exon sequences
Seq C1 exon
GTTTCTCTGCGGCAAGGAGATCAAGAAGAGGAAATGCATTTTCCGACTAAGAACGAGGGTCCCTCCTAACCCTCCATCTAAGTTGTACCCAGAGAAGGCCCAAAAAAGTGATGCACATAGGGGACGCAAAAAAGCAGTCAGCAGAAGCAG
Seq A exon
TAACTCTGATCCTGCAGAGAAGCGGAGGAAGAAGAGGGCCAAGTGGCTGCTGGAAGATGCTATTCCTAAC
Seq C2 exon
AATGACCTCACCTCCAGCTGGAGCACCAACCATCATATGGCCAACATCTTCGACTTCACGCTGGACGAGCTTCAGAGCTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078050-'13-12,'13-10,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=0.667 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTAAGAACGAGGGTCCCT
R:
CCAGCGTGAAGTCGAAGATGT
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]