GgaEX7009977 @ galGal4
Exon Skipping
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5912095-5912637:-
Coord C1 exon
chr19:5912440-5912637
Coord A exon
chr19:5912318-5912356
Coord C2 exon
chr19:5912095-5912215
Length
39 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTCTCTCCATCCTAGCTT
3' ss Score
7.23
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
CGGAGGCGTACGAGCCATGCCACAACCCCGGCGTGCCCGCGGGCGGGCGGCAGAGCCCCGAGCGGCGGCTGTACCCGGCGGGCAGCACGCTGCGCTTCTCCTGCACCGCTGGGCGGGCGCTGCTGGGTGAGGGCAATCTGCGCTGCCTGCCCGGGCACCCCTCGCGCTGGAGCGGCTCGCCTCCCATCTGCAAGGCGG
Seq A exon
CTTCCTATGATGAGTTTTACAGCAATCGCAATCTGGACG
Seq C2 exon
CCGTGGCCAAAGCTGTGCCCTCGGAGACGGCACTGGAGGGCACCAATGTGGCCATCGCCATCTTCCTGCCTGTGCTGGTGCTGGCTCTGCTCATCGGAGGCGTTTACCTCTACTTCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=86.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGGTGAGGGCAATCT
R:
CACATTGGTGCCCTCCAGTG
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]