MmuEX0041886 @ mm9
Exon Skipping
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77790246-77791156:+
Coord C1 exon
chr11:77790246-77790443
Coord A exon
chr11:77790747-77790785
Coord C2 exon
chr11:77791039-77791156
Length
39 bp
Sequences
Splice sites
3' ss Seq
GCCCTCCCCTCTTGTTCCAGCCT
3' ss Score
9.02
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TGGAACAATTCAAGCCGTGCCATGGCCTCAGCGCCCCGGAGAATGGTGCCCGCAGCCCTGAGAAGCGGCTTCACCCAGCAGGGGCCACCATCCACTTCTCCTGTGCCCCTGGTTATGTGCTGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTG
Seq A exon
CCTCTCTGGATGGGTTCTACAACGGCCGTAGCCTGGATG
Seq C2 exon
TTGCCAAGGCACCTGCCGCCTCCAGTGCCCTGGACGCTGCTCACCTGGCTGCTGCCATCTTCCTACCATTGGTGGCCATGGTGTTGCTGGTGGGAGGAGTGTACCTCTATTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=86.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCACCACCCATCTGTAG
R:
CTCCCACCAGCAACACCATG
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: