RnoEX0079954 @ rn6
Exon Skipping
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64867169-64867980:-
Coord C1 exon
chr10:64867783-64867980
Coord A exon
chr10:64867526-64867564
Coord C2 exon
chr10:64867169-64867286
Length
39 bp
Sequences
Splice sites
3' ss Seq
GCCCTCCCCTCTTGTTCTAGCTT
3' ss Score
10.16
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TGGAACAGTTCAAACCATGTCATGGCCTCAGTGCCCCTGAGAATGGTGCCCGCAGCCCTGAGAAGAGGCTCCACCCAGCAGGGGCCACCATTCACTTCTCCTGTGCCCCTGGTTATGTGCTGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACACCCCTCACATTGGAGTGATCCTCCACCCATCTGTAGGGCTG
Seq A exon
CTTCTCTGGATGGGTTCTACAACGGCCGTAGCCTGGATG
Seq C2 exon
TTGCCAAGGCACCTGCCACCTCCAGTGCCCTGGATGCTGCCCACATGGCAGCTGCCATCTTTCTACCATTGGTGGCCATGGTGTTGCTGGTGGGAGGAGTGTACCTCTATTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=86.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCCTCACATTGGAGTGA
R:
TGGTAGAAAGATGGCAGCTGC
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]