GgaEX1052042 @ galGal3
Exon Skipping
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7353096-7354218:+
Coord C1 exon
chr15:7353096-7353290
Coord A exon
chr15:7353782-7353814
Coord C2 exon
chr15:7354104-7354218
Length
33 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCATTTCTCTTCCAGTCA
3' ss Score
9.81
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CGGAGGAGTCTCTGGCCTGTGACAACCCAGGGCTGCCAGAAAACGGCTACCAAATCCTCTACAAACGCCTCTACCTGCCCGGCGAGTCTCTGACCTTCATGTGCTATGAGGGCTTCGAGCTCATGGGGGAGGTGACCATCAAGTGCATACTGGGACAGCCGTCGCACTGGAGTGGGCCACTGCCCATCTGCAAAG
Seq A exon
TCAATCAGGACAGCTTTGAGCACGCTTTGGAAG
Seq C2 exon
TAGCAGAAGCTGCTGCAGAGACATCGTTGGAGGGGGGAAATATGGCCTTGGCCATCTTCATCCCAGTGCTGATCATCTCCTTGCTGCTGGGAGGAGCCTACATCTACATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-'12-16,'12-15,14-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGCTATGAGGGCTTCGA
R:
ATGTCTCTGCAGCAGCTTCTG
Band lengths:
122-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]