MmuEX6019726 @ mm10
Exon Skipping
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112425614-112428570:-
Coord C1 exon
chr5:112428376-112428570
Coord A exon
chr5:112426726-112426758
Coord C2 exon
chr5:112425614-112425725
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTTCCTGTTTTCTGTTTCAGTTA
3' ss Score
12.33
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTGAGGAGTCCCTGGCGTGTGACAACCCAGGACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCGGCTGTACCTGCCCGGAGAGTCCCTCACCTTCATGTGCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGTCCCATTGGAGTGGGCCCCTGCCCATCTGTAAAG
Seq A exon
TTAACCAAGACAGTTTTGAACATGCATTGGAAG
Seq C2 exon
CAGAAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAACATGGCGCTGGCCATCTTCATTCCGGTCCTTCTCATCTCCTTGCTACTGGGAGGAGCCTACATCTACGTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153-'30-33,'30-32,31-33=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGAGCTCATGGGCGAAGT
R:
CCATGTTCCCACCTTCCAGTG
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types