RnoEX0079962 @ rn6
Exon Skipping
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50233338-50237178:+
Coord C1 exon
chr12:50233338-50233532
Coord A exon
chr12:50234981-50235013
Coord C2 exon
chr12:50237067-50237178
Length
33 bp
Sequences
Splice sites
3' ss Seq
GCTTCCTATTTCCCTTTCAGTTA
3' ss Score
10.05
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCGAGGAGTCCCTGGCGTGTGACAACCCAGGGCTGCCTGAAAACGGATACCAGATCCTGTATAAGCGGTTGTACCTACCCGGAGAGTCCCTCACGTTCATGTGCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGTCCCATTGGAGCGGGCCCCTGCCCATCTGTAAAG
Seq A exon
TTAACCAAGACAGTTTTGAACATGCGTTGGAAG
Seq C2 exon
CAGAAGCAGCAGCAGAGTCCTCACTGGAAGGCGGGAACATGGCCCTAGCCATCTTCATTCCGGTCCTTCTCATCTCCTTGCTACTGGGAGGAGCCTACATCTATGTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612-'28-29,'28-26,29-29
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGGTGCATTCTGGGAC
R:
CGGAATGAAGATGGCTAGGGC
Band lengths:
121-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]