BtaEX6073567 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68306570-68313621:+
Coord C1 exon
chr17:68306570-68306764
Coord A exon
chr17:68310619-68310651
Coord C2 exon
chr17:68313507-68313621
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTCCAATTTTTCTCTTTCAGTTA
3' ss Score
9.83
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CGGAGGAGTCCCTGGCCTGTGACAACCCAGGGTTGCCGGAGAACGGGTACCAGATCCTCTACAAACGACTCTACCTGCCTGGAGAGTCCCTCACCTTCATGTGCTACGAGGGCTTCGAGCTGATGGGCGAAGTGACCATTCGCTGCATCCTGGGACAGCCATCGCACTGGAACGGGCCGCTGCCCGTCTGCAAAG
Seq A exon
TTAATCAAGACAGCTTTGAACACGCCTTAGAAG
Seq C2 exon
TAGCAGAAGCGGCAGCAGAGACATCTCTGGAAGGAGGAAACATGGCTCTGGCTATCTTCATCCCTGTCCTCATCATCTCCTTACTGCTGGGAGGAGCCTACATTTACATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569-'13-19,'13-18,14-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGACCATTCGCTGCATCC
R:
GCCATGTTTCCTCCTTCCAGA
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]