DreEX6089840 @ danRer10
Exon Skipping
Gene
ENSDARG00000100594 | sez6l
Description
seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
Coordinates
chr10:44818842-44820530:+
Coord C1 exon
chr10:44818842-44819036
Coord A exon
chr10:44819907-44819942
Coord C2 exon
chr10:44820416-44820530
Length
36 bp
Sequences
Splice sites
3' ss Seq
TATTGTCCTTTTTATTTCAGCCA
3' ss Score
7.79
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CAGAAGAATCCGTGTCCTGTGAGAATCCCGGCCTTCCCGACAATGGCTACCAGATTCTGTCTAAAAGACTTTACCTTCCTGGAGAGTCTCTGACCTTCATGTGCTACCAGGGATATGAGCTTATCGGTGAAATGGCCATCAAGTGCATTCTGGGAAATCCTTCATTCTGGAGTGGACCATTGCCCCTTTGCAGAG
Seq A exon
CCAATCATGAATGTTCTGGCAATCATGCATTAGAGG
Seq C2 exon
TGTCTGAGGCGGCTGCAGAATCCTCTTTTGATGGGGGAAGTTTGGCTCTGGCTATATTCATCCTGGTGCTGCTGGTGTCTGCGGTGCTCGGAGGAACTTACATCTACATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100594-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCATCAAGTGCATTCTGG
R:
CAGAGCCAAACTTCCCCCATC
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]