BtaEX6085572 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20880507-20881397:-
Coord C1 exon
chr19:20881200-20881397
Coord A exon
chr19:20880883-20880921
Coord C2 exon
chr19:20880507-20880624
Length
39 bp
Sequences
Splice sites
3' ss Seq
GCCCTCCCCTCTTATTCCAGCCT
3' ss Score
8.17
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TGGAACAGCTCAAACCGTGCCATGGCCTCAGCGCCCCCGAGAATGGTGCCCGCAGTCCCGAGAAGCGGCTGCACCCAGCGGGGGCTACTGTCCACTTCTCATGTGCCCCTGGCTATGTGCTGAAGGGCCAGGCCAGCATCAAGTGTGTGCCCGGACACCCCTCACATTGGAGTGACCCCCCGCCCATCTGTAGGGCTG
Seq A exon
CCTCTCTGGACGGCTTCTACAGCGGCCGCAGCCTGGATG
Seq C2 exon
TTGCCAAGGTGCCAGCTGCCTCCAGCACACTGGATGCTGCTCACCTCGCAGCTGCCATCTTCTTGCCGCTGGTAGCGATGGCGCTCTTGGTGGGAGGCGTGTACCTCTACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979-'16-22,'16-21,17-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=86.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCCTCACATTGGAGTGA
R:
GCTACCAGCGGCAAGAAGATG
Band lengths:
120-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]