DreEX6089286 @ danRer10
Exon Skipping
Gene
ENSDARG00000100876 | sez6a
Description
seizure related 6 homolog a [Source:ZFIN;Acc:ZDB-GENE-030131-8208]
Coordinates
chr10:36890606-36892037:-
Coord C1 exon
chr10:36891843-36892037
Coord A exon
chr10:36890806-36890841
Coord C2 exon
chr10:36890606-36890714
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTCATGTGTGTTTTTTCAGCTT
3' ss Score
9.99
5' ss Seq
ACGGTGAAA
5' ss Score
2.84
Exon sequences
Seq C1 exon
CTGAGAGATATGAGCCGTGCAGTAATCCTGGTGCTCCCTCCTTGGCCATCCAGAGCTCAGAGAAAGCCTTCTTCCAGGCAGGAGAAACCCTGAGCTTCACCTGCAGGGCGGGTTATGTGCTACAGGGTGAAGCCACTGTCCACTGCCTACCTGGTCATCCGTCTCGGTGGAGCGCTGCGCCCCCTATGTGCAGAG
Seq A exon
CTTCTTCAAGAAACACTGAACAACACAGACTGAACG
Seq C2 exon
GTGCTGATTCAGAGTTTGACGTGGAAGGCGTGAACATCGCCATCGCGGTTCTGATTCCTGTGGCAGTGGTGCTGATGCTGCTCTTGGTGGTTTTTCTCTGCATCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100876-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.615 C2=0.054
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9),PF151021=TMEM154=PU(18.0=30.3)
A:
PF151021=TMEM154=FE(10.8=100)
C2:
PF151021=TMEM154=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGCCTACCTGGTCATC
R:
CACCACTGCCACAGGAATCAG
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]